9/17/2023 0 Comments View sam file linuxVim: Warning: Output is not to a terminal Then just typed $ view -b -S file.sam > file.bam (again replacing the word 'file' with the actual name of my file.) sam file into the samtools-0.1.19 folder then went to terminal opened that folder using the cd xxxx/xxx/xxx/samtools-0.1.19 However, when I do this I just get the error (with the word 'file' replaced with the actual name of my file.) $ samtools view -b -S file.sam > file.bam sam files in it (using cd command), and then use the code: Change directory to the directory with my. My impression was I would be able to open terminal. I downloaded the samtools-0.1.19.tar file, expanded it and managed to compile it using the 'make' command (I had to download xcode for mac before this would work.). (I really am a bit out of my depth here). I think I might have done something wrong when I installed samtools. I tried this but it comes up with the error:
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